Health effects of Baltic herring and salmon: a benefit-risk assessment: Difference between revisions

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|publishingyear=2018
|publishingyear=2019
|authors=Jouni T. Tuomisto, Arja Asikainen, Päivi Meriläinen, Päivi Haapasaari}}
|authors=Jouni T. Tuomisto, Arja Asikainen, Päivi Meriläinen, Päivi Haapasaari}}
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'''Health effects of Baltic herring and salmon: a benefit-risk assessment''' is a research manuscript about the [[Goherr assessment]] performed on the BONUS GOHERR project between 2015-2018. The manuscript is to be submitted to BMC Public Health [https://bmcpublichealth.biomedcentral.com/submission-guidelines/preparing-your-manuscript/research-article].
'''Health effects of nutrients and environmental pollutants in Baltic herring and salmon: a quantitative benefit-risk assessment''' is a research manuscript about the [[Goherr assessment]] performed on the BONUS GOHERR project between 2015-2018. The manuscript was submitted to BMC Public Health [https://bmcpublichealth.biomedcentral.com/submission-guidelines/preparing-your-manuscript/research-article]. Thank you for your interest.


== Title page ==
* [https://www.livsmedelsverket.se/om-oss/press/nyheter/pressmeddelanden/efsa-skarper-bedomningen-av-dioxiner-och-pcb Swedish Food Safety Authority about EFSA dioxin assessment]


* Title: Health effects of Baltic herring and salmon: a benefit-risk assessment
Changes to the revision 2019-09-24:
* Authors:
*: Jouni T. Tuomisto, jouni.tuomisto[]thl.fi, (corresponding author), National Institute for Health and Welfare, Kuopio, Finland.
*: Arja Asikainen, arja.asikainen[]thl.fi, National Institute for Health and Welfare, Kuopio, Finland.
*: Päivi Meriläinen, paivi.merilainen@thl.fi, National Institute for Health and Welfare, Kuopio, Finland.
*: Päivi Haapasaari, paivi.haapasaari[]helsinki.fi, University of Helsinki, Finland.


== Abstract ==
In addition to the analysis presented in this paper, the survey was conducted for the purpose of a consumer perception and consumption study[11] and therefore only part of the survey results are presented in this paper.


The Abstract should not exceed 350 words.
→ The survey was designed and conducted for the purposes of this study and another study about consumer perception and consumption. The latter study[11] was published first, and it contains a more detailed description of the study methods, including the questionnaire.


'''Background:''' the context and purpose of the study
Due to these reasons and according to the national guidelines, there was no need for ethical approval[65].


'''Methods:''' how the study was performed and statistical tests used
→ Due to these reasons and according to the national guidelines, there was no need for ethical approval.  (National Advisory Board of Research Ethics. Ethical principles of research in the humanities and social and behavioural sciences and proposals for ethical review. Helsinki; 2009. https://www.tenk.fi/sites/tenk.fi/files/ethicalprinciples.pdf.  Accessed 24 Sept 2019.)


'''Results:''' the main findings
22. Huan Yang, Pengcheng Xun, Ka He. Fish and Fish Oil Intake in Relation to Risk of Asthma: A Systematic Review and Meta-Analysis. PLOS November 12, 2013. https://doi.org/10.1371/journal.pone.0080048


'''Conclusions:''' brief summary and potential implications
22. Yang H, Xun P, He K (2013) Fish and Fish Oil Intake in Relation to Risk of Asthma: A Systematic Review and Meta-Analysis. PLOS ONE 8(11): e80048. https://doi.org/10.1371/journal.pone.0080048


== Keywords ==
23. Asmaa S Abdelhamid, Tracey J Brown, Julii S Brainard, Priti Biswas, Gabrielle C Thorpe, Helen J Moore, Katherine HO Deane, Fai K AlAbdulghafoor, Carolyn D Summerbell, Helen V Worthington, Fujian Song, Lee Hooper. (2018) Omega‐3 fatty acids for the primary and secondary prevention of cardiovascular disease. Cochrane Systematic Review. https://doi.org/10.1002/14651858.CD003177.pub4


Fish consumption, dioxins, methylmercury, benefit-risk assessment, health impact, sperm concentration, tooth defect, intelligence quotient, knowledge crystal, food recommendation.
Abdelhamid  AS, Brown  TJ, Brainard  JS, Biswas  P, Thorpe  GC, Moore  HJ, Deane  KHO, AlAbdulghafoor  FK, Summerbell  CD, Worthington  HV, Song  F, Hooper  L. Omega‐3 fatty acids for the primary and secondary prevention of cardiovascular disease. Cochrane Database of Systematic Reviews 2018, Issue 11. Art. No.: CD003177. DOI: 10.1002/14651858.CD003177.pub4.  


== Background ==
24. Zheng J, Huang T, Yu Y, Hu X et al. Fish consumption and CHD mortality: an updated meta-analysis of seventeen cohort studies. Public Health Nutrition (2012) 15:4:725-737. DOI: https://doi.org/10.1017/S1368980011002254


The Background section should explain the background to the study, its aims, a summary of the existing literature and why this study was necessary or its contribution to the field.
61. Ignatius S, Delaney A, Haapasaari P. Socio-cultural values as a dimension of fisheries governance: the cases of Baltic salmon and herring. Forthcoming.  


== Methods ==
Ignatius, S. H. M., Haapasaari, P. E., & Delaney, A. (2017). Socio-cultural values as a dimension of fisheries management: the cases of Baltic salmon and herring. 52. Abstract from BONUS SYMPOSIUM: Science delivery for sustainable use of the Baltic Sea living resources, Tallinna, Estonia.


The methods section should include:
'''Additional changes due to an additional round of minor improvements


    the aim, design and setting of the study
* Ethical permission was not needed in any of the study countries, according to national guidelines for research and data protection: Finland, Sweden (Lag (2003:460) om etikprövning av forskning som avser människor [https://www.riksdagen.se/sv/dokument-lagar/dokument/svensk-forfattningssamling/lag-2003460-om-etikprovning-av-forskning-som_sfs-2003-460]), Denmark (National Videnskabsetisk Komité. Hvad skal jeg anmelde? http://www.nvk.dk/forsker/naar-du-anmelder/hvilke-projekter-skal-jeg-anmelde), and Estonia (Riigi Teataja. Isikuandmete kaitse seadus RT 2007, 24, 127. https://www.riigiteataja.ee/akt/130122010011). Accessed 28 Nov 2019.
    the characteristics of participants or description of materials
    a clear description of all processes, interventions and comparisons. Generic drug names should generally be used. When proprietary brands are used in research, include the brand names in parentheses
    the type of statistical analysis used, including a power calculation if appropriate


== Results ==


This should include the findings of the study including, if appropriate, results of statistical analysis which must be included either in the text or as tables and figures.
=== Code for estimating TEQ from chinese PCB7 ===


== Discussion ==
See Du et al, 2012.


This section should discuss the implications of the findings in context of existing research and highlight limitations of the study.
<rcode>
library(OpasnetUtils)


== Conclusions ==
objects.latest("Op_en3104", code_name="preprocess") # [[EU-kalat]] eu eu2
objects.latest("Op_en4017", code_name="initiate") # [[Toxic equivalency factor]] TEF


This should state clearly the main conclusions and provide an explanation of the importance and relevance of the study reported.
eu <- Ovariable(
  "eu",
  dependencies = data.frame(
    Name=c("euRaw", "TEF", "indexguide"),
    Ident=c(NA,"Op_en4017/initiate", NA)
  ),
  formula = function(...) {
    euRaw$Length<-as.numeric(as.character(euRaw$Length_mean_mm))
    euRaw$Year <- as.numeric(substr(euRaw$Catch_date, nchar(as.character(euRaw$Catch_date))-3,100))
    euRaw@marginal[colnames(euRaw@output) %in% c("Length","Year")] <- TRUE


== List of abbreviations ==
    eu <- euRaw[,c(1:4, 10, 20, 21, 18)] # See below + Length, Year, Result
    colnames(eu@output)[1:5] <- c("THLcode", "Matrix", "Compound", "Fish", "N")
   
    temp <- eu * TEF
    temp$Equivalency <- "TEF"
    eu$Equivalency <- "Raw"
    eu <- combine(eu, temp)
   
    eu$Compound <- factor( # Compound levels are ordered based on the data table on [[TEF]]
      eu$Compound,
      levels = unique(c(levels(TEF$Compound), levels(eu$Compound)))
    )
    eu$Compound <- eu$Compound[,drop=TRUE]
   
    return(eu)
  }
)


If abbreviations are used in the text they should be defined in the text at first use, and a list of abbreviations should be provided.
eu <- EvalOutput(eu, verbose=TRUE)


== Declarations ==
pcb7 <- c("PCB28.31","PCB52","PCB101","PCB118","PCB138","PCB153","PCB180")
 
eu2 <- eu[eu$Fish=="Baltic herring" & (eu$Equivalency=="TEF" | eu$Compound %in% pcb7) , ]
=== Ethics approval and consent to participate ===
eu2 <- oapply(eu2, c("THLcode","Equivalency"), sum)
 
result(eu2)[eu2$Equivalency=="Raw"] <- 1 / result(eu2)[eu2$Equivalency=="Raw"]
An online survey was performed to adult consumers in Denmark, Estonia, Finland, and Sweden by Taloustutkimus Ltd. We asked about fish eating habits but not about health or other sensitive issues. We did not ask or collect identity information of the respondents, except age, gender, and country, which were used for classification in analyses. The survey did not involve any interventions. Due to these reasons, there was no need for ethical approval according to the THL guidance.
eu2 <- oapply(eu2,"THLcode",prod)
 
eu2 <- eu2[eu2$THLcode!="09K0763",] # For some reason, Raw drops out.
=== Consent for publication ===
View(eu2@output)
 
hist(eu$euResult*12.5) # The chinese PSB7 concentration was 12.5 ug/kg.
Not applicable.
</rcode>
 
''If your manuscript contains any individual person’s data in any form (including any individual details, images or videos), consent for publication must be obtained from that person, or in the case of children, their parent or legal guardian. All presentations of case reports must have consent for publication.
 
''You can use your institutional consent form or our consent form if you prefer. You should not send the form to us on submission, but we may request to see a copy at any stage (including after publication).
 
''See our editorial policies for more information on consent for publication.
 
''If your manuscript does not contain data from any individual person, please state “Not applicable” in this section.
 
=== Availability of data and materials ===
 
The whole benefit-risk assessment was performed online at http://en.opasnet.org/w/Goherr_assessment, and all details (including data, code, results, descriptions, and discussions) are openly available, except for the personal data from the consumer survey. The consumer survey data was converted to and published as synthetic data, i.e. data that does not represent any real individuals but that has similar statistical properties as the actual data.
 
The datasets generated and analysed during the current study, together with the other material mentioned above, are available in the IDA research data repository, [###PERSISTENT WEB LINK TO DATASETS]
 
=== Competing interests ===
 
The authors declare that they have no competing interests.
 
=== Funding ===
 
This work resulted from the BONUS GOHERR project (Integrated governance of Baltic herring and salmon stocks involving stakeholders, 2015-2018) that was supported by BONUS (Art 185), funded jointly by the EU, the Academy of Finland and the Swedish Research Council for Environment, Agricultural Sciences and Spatial Planning.
 
=== Authors' contributions ===
 
JT planned the assessment design, performed most of the analyses, and wrote the first draft of the manuscript based on input from other authors. PH coordinated the project and participated in designing and linking of this work to other parts of the project. AA designed and performed the questionnaire study. PM participated in the discussions about the design and interpretation of results. All authors read and approved the final manuscript.
 
=== Acknowledgements ===
 
We thank all BONUS GOHERR researchers and stakeholder meeting participants, who participated in lively discussions about the importance of Baltic fisheries management and health.
 
=== Authors' information ===
 
No specific information.
 
== Endnotes ==
 
Endnotes should be designated within the text using a superscript lowercase letter and all notes (along with their corresponding letter) should be included in the Endnotes section. Please format this section in a paragraph rather than a list.
 
== References ==
 
<references/>
 
Examples of the Vancouver reference style are shown below.
 
See our editorial policies for author guidance on good citation practice
 
Web links and URLs: All web links and URLs, including links to the authors' own websites, should be given a reference number and included in the reference list rather than within the text of the manuscript. They should be provided in full, including both the title of the site and the URL, as well as the date the site was accessed, in the following format: The Mouse Tumor Biology Database. http://tumor.informatics.jax.org/mtbwi/index.do. Accessed 20 May 2013. If an author or group of authors can clearly be associated with a web link, such as for weblogs, then they should be included in the reference.
 
Example reference style:
 
Article within a journal
 
Smith JJ. The world of science. Am J Sci. 1999;36:234-5.
 
Article within a journal (no page numbers)
 
Rohrmann S, Overvad K, Bueno-de-Mesquita HB, Jakobsen MU, Egeberg R, Tjønneland A, et al. Meat consumption and mortality - results from the European Prospective Investigation into Cancer and Nutrition. BMC Medicine. 2013;11:63.
 
Article within a journal by DOI
 
Slifka MK, Whitton JL. Clinical implications of dysregulated cytokine production. Dig J Mol Med. 2000; doi:10.1007/s801090000086.
 
Article within a journal supplement
 
Frumin AM, Nussbaum J, Esposito M. Functional asplenia: demonstration of splenic activity by bone marrow scan. Blood 1979;59 Suppl 1:26-32.
 
Book chapter, or an article within a book
 
Wyllie AH, Kerr JFR, Currie AR. Cell death: the significance of apoptosis. In: Bourne GH, Danielli JF, Jeon KW, editors. International review of cytology. London: Academic; 1980. p. 251-306.
 
OnlineFirst chapter in a series (without a volume designation but with a DOI)
 
Saito Y, Hyuga H. Rate equation approaches to amplification of enantiomeric excess and chiral symmetry breaking. Top Curr Chem. 2007. doi:10.1007/128_2006_108.
 
Complete book, authored
 
Blenkinsopp A, Paxton P. Symptoms in the pharmacy: a guide to the management of common illness. 3rd ed. Oxford: Blackwell Science; 1998.
 
Online document
 
Doe J. Title of subordinate document. In: The dictionary of substances and their effects. Royal Society of Chemistry. 1999. http://www.rsc.org/dose/title of subordinate document. Accessed 15 Jan 1999.
 
Online database
 
Healthwise Knowledgebase. US Pharmacopeia, Rockville. 1998. http://www.healthwise.org. Accessed 21 Sept 1998.
 
Supplementary material/private homepage
 
Doe J. Title of supplementary material. 2000. http://www.privatehomepage.com. Accessed 22 Feb 2000.
 
University site
 
Doe, J: Title of preprint. http://www.uni-heidelberg.de/mydata.html (1999). Accessed 25 Dec 1999.
 
FTP site
 
Doe, J: Trivial HTTP, RFC2169. ftp://ftp.isi.edu/in-notes/rfc2169.txt (1999). Accessed 12 Nov 1999.
 
Organization site
 
ISSN International Centre: The ISSN register. http://www.issn.org (2006). Accessed 20 Feb 2007.
 
Dataset with persistent identifier
 
Zheng L-Y, Guo X-S, He B, Sun L-J, Peng Y, Dong S-S, et al. Genome data from sweet and grain sorghum (Sorghum bicolor). GigaScience Database. 2011. http://dx.doi.org/10.5524/100012.
 
== Figures, tables and additional files ==
 
See General formatting guidelines for information on how to format figures, tables and additional files.

Latest revision as of 13:58, 28 November 2019


Health effects of nutrients and environmental pollutants in Baltic herring and salmon: a quantitative benefit-risk assessment is a research manuscript about the Goherr assessment performed on the BONUS GOHERR project between 2015-2018. The manuscript was submitted to BMC Public Health [2]. Thank you for your interest.

Changes to the revision 2019-09-24:

In addition to the analysis presented in this paper, the survey was conducted for the purpose of a consumer perception and consumption study[11] and therefore only part of the survey results are presented in this paper.

→ The survey was designed and conducted for the purposes of this study and another study about consumer perception and consumption. The latter study[11] was published first, and it contains a more detailed description of the study methods, including the questionnaire.

Due to these reasons and according to the national guidelines, there was no need for ethical approval[65].

→ Due to these reasons and according to the national guidelines, there was no need for ethical approval. (National Advisory Board of Research Ethics. Ethical principles of research in the humanities and social and behavioural sciences and proposals for ethical review. Helsinki; 2009. https://www.tenk.fi/sites/tenk.fi/files/ethicalprinciples.pdf. Accessed 24 Sept 2019.)

22. Huan Yang, Pengcheng Xun, Ka He. Fish and Fish Oil Intake in Relation to Risk of Asthma: A Systematic Review and Meta-Analysis. PLOS November 12, 2013. https://doi.org/10.1371/journal.pone.0080048

22. Yang H, Xun P, He K (2013) Fish and Fish Oil Intake in Relation to Risk of Asthma: A Systematic Review and Meta-Analysis. PLOS ONE 8(11): e80048. https://doi.org/10.1371/journal.pone.0080048

23. Asmaa S Abdelhamid, Tracey J Brown, Julii S Brainard, Priti Biswas, Gabrielle C Thorpe, Helen J Moore, Katherine HO Deane, Fai K AlAbdulghafoor, Carolyn D Summerbell, Helen V Worthington, Fujian Song, Lee Hooper. (2018) Omega‐3 fatty acids for the primary and secondary prevention of cardiovascular disease. Cochrane Systematic Review. https://doi.org/10.1002/14651858.CD003177.pub4

Abdelhamid AS, Brown TJ, Brainard JS, Biswas P, Thorpe GC, Moore HJ, Deane KHO, AlAbdulghafoor FK, Summerbell CD, Worthington HV, Song F, Hooper L. Omega‐3 fatty acids for the primary and secondary prevention of cardiovascular disease. Cochrane Database of Systematic Reviews 2018, Issue 11. Art. No.: CD003177. DOI: 10.1002/14651858.CD003177.pub4.

24. Zheng J, Huang T, Yu Y, Hu X et al. Fish consumption and CHD mortality: an updated meta-analysis of seventeen cohort studies. Public Health Nutrition (2012) 15:4:725-737. DOI: https://doi.org/10.1017/S1368980011002254

61. Ignatius S, Delaney A, Haapasaari P. Socio-cultural values as a dimension of fisheries governance: the cases of Baltic salmon and herring. Forthcoming.

Ignatius, S. H. M., Haapasaari, P. E., & Delaney, A. (2017). Socio-cultural values as a dimension of fisheries management: the cases of Baltic salmon and herring. 52. Abstract from BONUS SYMPOSIUM: Science delivery for sustainable use of the Baltic Sea living resources, Tallinna, Estonia.

Additional changes due to an additional round of minor improvements


Code for estimating TEQ from chinese PCB7

See Du et al, 2012.

+ Show code

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