Attributable risk

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Revision as of 13:11, 26 April 2014 by Jouni (talk | contribs) (calculation of proportion of cases in subgroups added)
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Population attributable fraction (PAF) of an exposure agent is the fraction of disease that would disappear if the exposure to that agent would disappear.

Question

How to calculate population attributable fraction?

Answer

Probably this is the most useful form of population attributable fraction (PAF or AFp) for impact assessment:

Failed to parse (SVG (MathML can be enabled via browser plugin): Invalid response ("Math extension cannot connect to Restbase.") from server "https://wikimedia.org/api/rest_v1/":): {\displaystyle AF_p = \Sigma_i p_{ci} \frac{p_i(RR_i - 1)}{p_i(RR_i - 1) + 1},}

where

  • pci is the proportion of cases falling in subgroup i (so that Σipci = 1),
  • pi is the fraction of exposed people within subgroup i (and 1-pi is the fraction of unexposed),
  • RRi is the risk ratio for subgroup i due to the subgroup-specific exposure level (assuming that everyone in that subgroup is exposed to that level or none). ----#: . Does the equation hold if exposure level varies between groups? --Jouni (talk) 15:43, 25 April 2014 (EEST) (type: truth; paradigms: science: comment)

pci can be calculated for each subgroup with the following equation if the background risk of disease is equal in all subgroups (and thus cancels out):

Failed to parse (SVG (MathML can be enabled via browser plugin): Invalid response ("Math extension cannot connect to Restbase.") from server "https://wikimedia.org/api/rest_v1/":): {\displaystyle p_{ci} = \frac{N_i \Pi_j RR_{i,j}}{\Sigma_i N_i \Pi_j RR_{i,j}},}

where

  • Ni is the number of people in each subgroup i,
  • RRi,j is the risk ratio in subgroup i due to pollutant j (accounting for the estimated exposure in the subgroup). Note that this assumes that multiplicative assumption holds between different pollutant effects.

This page does not contain R code. Instead, it is written as part of the model in Health impact assessment.

Rationale

WHO approach

[1] PAF is

Failed to parse (SVG (MathML can be enabled via browser plugin): Invalid response ("Math extension cannot connect to Restbase.") from server "https://wikimedia.org/api/rest_v1/":): {\displaystyle PAF = \frac{\Sigma_{i=1}^n P_i RR_i - \Sigma_{i=1}^n P'_i RR_i}{\Sigma_{i=1}^n P_i RR_i}}

where i is a certain exposure level, P is the fraction of population in that exposure level, RR is the relative risk at that exposure level, and P' is the fraction of population in a counterfactual ideal situation (where the exposure is typically lower).

Based on this, we can limit our examination to a situation where there are only two population groups, one exposed to background level (with relative risk 1) and the other exposed to a higher level (with relative risk RR). In the counterfactual situation nobody is exposed. Thus, we get

Failed to parse (SVG (MathML can be enabled via browser plugin): Invalid response ("Math extension cannot connect to Restbase.") from server "https://wikimedia.org/api/rest_v1/":): {\displaystyle PAF = \frac{(P RR + (1-P)*1) - (0*RR + 1*1)}{P RR + (1-P)*1}}

Failed to parse (SVG (MathML can be enabled via browser plugin): Invalid response ("Math extension cannot connect to Restbase.") from server "https://wikimedia.org/api/rest_v1/":): {\displaystyle PAF = \frac{P RR - P}{P RR + 1 - P}}

Failed to parse (SVG (MathML can be enabled via browser plugin): Invalid response ("Math extension cannot connect to Restbase.") from server "https://wikimedia.org/api/rest_v1/":): {\displaystyle PAF = \frac{P(RR - 1)}{P(RR -1) + 1}}

See also Attributable risk, although it is a stub.

This equation is used in e.g. Health impact assessment.

Rothman approach

Modern Epidemiology [2] is the authoritative source of epidemiology. They first define attributable fraction AF for a cohort of people (pages 295-297). It is the fraction of cases among the exposed that would not have occurred if the exposure would not have taken place:

Failed to parse (SVG (MathML can be enabled via browser plugin): Invalid response ("Math extension cannot connect to Restbase.") from server "https://wikimedia.org/api/rest_v1/":): {\displaystyle AF = \frac{RR - 1}{RR},}

where RR is the causal risk ratio.

The population attributable fraction AFp is that fraction among the whole cohort:

Failed to parse (SVG (MathML can be enabled via browser plugin): Invalid response ("Math extension cannot connect to Restbase.") from server "https://wikimedia.org/api/rest_v1/":): {\displaystyle AF_p = \frac{N_1 (R_1 - R_0)}{N_1 R_1 + N_0 R_0} = \frac{N_1 (R_1 - R_0)/R_0}{N_1 R_1/R_0 + N_0 R_0/R_0} = \frac{N_1 (RR - 1)}{N_1 RR + N_0}}

Failed to parse (SVG (MathML can be enabled via browser plugin): Invalid response ("Math extension cannot connect to Restbase.") from server "https://wikimedia.org/api/rest_v1/":): {\displaystyle = \frac{ \frac{N_1 (RR - 1)}{N_1 + N_0} }{ \frac{N_1 RR + N_0}{N_1 + N_0}} = \frac{ p (RR - 1) }{ \frac{N_1 RR - N_1 + (N_1 + N_0)}{N_1 + N_0}} = \frac{p (RR - 1)}{p RR - p + 1} = \frac{p (RR - 1)}{p (RR - 1) + 1},}

where

  • N1 and N0 are the numbers of exposed and unexposed people, respectively,
  • R1 and R0 are the risks of disease in the exposed and unexposed group, respectively, and RR = R1 / R0,
  • p is the fraction of exposed people among the whole cohort.

Note that there is a typo in the Modern Epidemiology book: the denominator should be p(RR-1)+1, not p(RR-1)-1.

Population attributable fraction can be calculated as a weighted average based on subgroup data:

Failed to parse (SVG (MathML can be enabled via browser plugin): Invalid response ("Math extension cannot connect to Restbase.") from server "https://wikimedia.org/api/rest_v1/":): {\displaystyle AF_p = \Sigma_i p_{ci} AF_{pi},}

where

  • pci is the proportion of cases falling in stratum (subgroup) i,
  • AFpi is the population attributable fraction calculated for the subgroup.

Specifically, we can divide the cohort into subgroups based on exposure (in the simplest case exposed and unexposed), so we get

Failed to parse (SVG (MathML can be enabled via browser plugin): Invalid response ("Math extension cannot connect to Restbase.") from server "https://wikimedia.org/api/rest_v1/":): {\displaystyle AF_p = p_c \frac{1(RR - 1)}{1(RR - 1) + 1} + (1 - p_c) \frac{0(RR - 1)}{0(RR - 1) +1} = p_c \frac{RR - 1}{RR},}

where pc is the proportion of cases in the exposed group among all cases; this is the same as exposure prevalence among cases.

pc can be calculated by first calculating number of cases in each subgroup:

Failed to parse (SVG (MathML can be enabled via browser plugin): Invalid response ("Math extension cannot connect to Restbase.") from server "https://wikimedia.org/api/rest_v1/":): {\displaystyle cases_i = N_i * background * \Pi_j e^{ln(RR_{uj}) exposure_{i,j}},}

where

  • casesi is the number of cases in subgroup i,
  • Ni is the number of people in subgroup i,
  • background is the background risk of the disease in the unexposed,
  • RRuj risk ratio for a unit exposure for each pollutant j,
  • exposurei,j is the amount of exposure in a subgroup i to pollutant j.

Therefore,

Failed to parse (SVG (MathML can be enabled via browser plugin): Invalid response ("Math extension cannot connect to Restbase.") from server "https://wikimedia.org/api/rest_v1/":): {\displaystyle p_{ci} = \frac{cases_i}{\Sigma_i cases_i} = \frac{N_i * background * \Pi e^{ln(RR_{uj}) exposure_{i,j}}}{background \Sigma N_i \Pi e^{ln(RR_{uj}) exposure_{i,j}}}}

Failed to parse (SVG (MathML can be enabled via browser plugin): Invalid response ("Math extension cannot connect to Restbase.") from server "https://wikimedia.org/api/rest_v1/":): {\displaystyle p_{ci} = \frac{N_i \Pi_j RR_{i,j}}{\Sigma_i N_i \Pi_j RR_{i,j}},}

where RRi,j = exp(ln(RRuj) exposurei,j).

References

  1. ↑ WHO: Health statistics and health information systems. [1]. Accessed 16 Nov 2013.
  2. ↑ Kenneth J. Rothman, Sander Greenland, Timothy L. Lash: Modern Epidemiology. Lippincott Williams & Wilkins, 2008. 758 pages.
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