OpasnetUtils/Tidy
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Description
a function that cleans the tables from Opasnet Base
Parameters
- data is a table from op_baseGetData function
Code
----#: . Tidy should widen the "Parameter" index as well as "Observation". Also it should enable marginal recognition of the widened variables. --Teemu R 15:57, 18 June 2012 (EEST) (type: truth; paradigms: science: comment)
- ----#: . Recognition could be achieved by adding a "variable name" -prefix to every location under the involved indices. --Teemu R 15:57, 18 June 2012 (EEST) (type: truth; paradigms: science: comment)
# TIDY ########### tidy: a function that cleans the tables from Opasnet Base
# data is a table from op_baseGetData function
tidy <- function (data, objname = "", idvar = "obs", direction = "wide") {
data$Result <- ifelse(!is.na(data$Result.Text), data$Result, as.character(data$Result.Text))
#data <- data[
# ifelse("Observation" %in% colnames(data),
# data$Observation != "Description",
# TRUE
# ),
# !colnames(data) %in% c("id", "Result.Text")
#]
data <- data[, !colnames(data) %in% c("id", "Result.Text")]
if("obs.1" %in% colnames(data)) { # this line is temporarily needed until the obs.1 bug is fixed.
data[, "obs"] <- data[, "obs.1"]
data <- data[, colnames(data) != "obs.1"]
}
if("Row" %in% colnames(data)) { # If user has given Row, it is used instead of automatic obs.
data <- data[, colnames(data) != "obs"]
colnames(data)[colnames(data) == "Row"] <- "obs"
}
if (objname != "") objname <- paste(objname, ":", sep = "")
if (direction == "wide") {
if("Observation" %in% colnames(data)) {
cols <- levels(data$Observation)
data <- reshape(data, idvar = idvar, timevar = "Observation", v.names = "Result", direction = "wide")
data <- data[colnames(data) != "obs"]
colnames(data) <- gsub("^Result.", objname, colnames(data))
for (i in paste(objname, cols, sep = "")) {
a <- suppressWarnings(as.numeric(data[, i]))
if (sum(is.na(a)) == 0) data[, i] <- a else data[, i] <- factor(data[, i])
}
colnames(data)[grepl(paste("^", objname, "result", sep = ""), colnames(data))] <- paste(objname, "Result", sep = "")
colnames(data)[grepl(paste("^", objname, "Amount", sep = ""), colnames(data))] <- paste(objname, "Result", sep = "")
return(data)
}
if("Parameter" %in% colnames(data)) {
cols <- levels(data$Parameter)
data <- reshape(data, idvar = idvar, timevar = "Parameter", v.names = "Result", direction = "wide")
data <- data[colnames(data) != "obs"]
colnames(data) <- gsub("^Result.", objname, colnames(data))
for (i in paste(objname, cols, sep = "")) {
a <- suppressWarnings(as.numeric(data[, i]))
if (sum(is.na(a)) == 0) data[, i] <- a else data[, i] <- factor(data[, i])
}
colnames(data)[grepl(paste("^", objname, "result", sep = ""), colnames(data))] <- paste(objname, "Result", sep = "")
colnames(data)[grepl(paste("^", objname, "Amount", sep = ""), colnames(data))] <- paste(objname, "Result", sep = "")
return(data)
}
}
data <- data[,colnames(data) != "obs"]
colnames(data)[colnames(data)=="Result"] <- paste(objname, "Result", sep = "")
return(data)
}
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