Impact Calculation Tool for R: Difference between revisions
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=== | ===Annual mortality rate (mort_rate)=== | ||
<t2b name="mortality" index="Age" desc="Kuvaus" unit="-"> | |||
0|49.8| | |||
1|49.8| | |||
2|49.8| | |||
3|49.8| | |||
4|49.8| | |||
5|10.2| | |||
6|10.2| | |||
7|10.2| | |||
8|10.2| | |||
9|10.2| | |||
10|10.6| | |||
11|10.6| | |||
12|10.6| | |||
13|10.6| | |||
14|10.6| | |||
15|30.6| | |||
16|30.6| | |||
17|30.6| | |||
18|30.6| | |||
19|30.6| | |||
20|50| | |||
21|50| | |||
22|50| | |||
23|50| | |||
24|50| | |||
25|47| | |||
26|47| | |||
27|47| | |||
28|47| | |||
29|47| | |||
30|48.6| | |||
31|48.6| | |||
32|48.6| | |||
33|48.6| | |||
34|48.6| | |||
35|99.4| | |||
36|99.4| | |||
37|99.4| | |||
38|99.4| | |||
39|99.4| | |||
40|156.6| | |||
41|156.6| | |||
42|156.6| | |||
43|156.6| | |||
44|156.6| | |||
45|247.6| | |||
46|247.6| | |||
47|247.6| | |||
48|247.6| | |||
49|247.6| | |||
50|395.8| | |||
51|395.8| | |||
52|395.8| | |||
53|395.8| | |||
54|395.8| | |||
55|555| | |||
56|555| | |||
57|555| | |||
58|555| | |||
59|555| | |||
60|534| | |||
61|534| | |||
62|534| | |||
63|534| | |||
64|534| | |||
65|702.4| | |||
66|702.4| | |||
67|702.4| | |||
68|702.4| | |||
69|702.4| | |||
70|975| | |||
71|975| | |||
72|975| | |||
73|975| | |||
74|975| | |||
75|1372.4| | |||
76|1372.4| | |||
77|1372.4| | |||
78|1372.4| | |||
79|1372.4| | |||
80|1619.6| | |||
81|1619.6| | |||
82|1619.6| | |||
83|1619.6| | |||
84|1619.6| | |||
85|1399.8| | |||
86|1399.8| | |||
87|1399.8| | |||
88|1399.8| | |||
89|1399.8| | |||
90|934| | |||
91|934| | |||
92|934| | |||
93|934| | |||
94|934| | |||
95|313| | |||
96|313| | |||
97|313| | |||
98|313| | |||
99|313| | |||
</t2b> | |||
===Mortality risk (mort_risk)=== | ===Mortality risk (mort_risk)=== | ||
mort_rate / pop_data | |||
===Start year (start-year)=== | ===Start year (start-year)=== | ||
| Line 150: | Line 253: | ||
==Analytica codes== | ==Analytica codes== | ||
| Line 212: | Line 293: | ||
sum(if Year_lt = period_vs_year then a else 0,Year_lt) | sum(if Year_lt = period_vs_year then a else 0,Year_lt) | ||
| Line 252: | Line 335: | ||
a | a | ||
'''Indices and function used in the code above:''' | |||
===Follow-up year (fu_year)=== | |||
sequence(Start_year,Start_year+(Followup_time-1),1) | |||
===Year in life table (year_lt)=== | |||
sequence(Start_year,Start_year+Followup_time+99,1) | |||
===Follow-up period in 5-year time steps (fu_period)=== | |||
sequence(Start_year,Start_year+(Followup_time-1),5) | |||
===5-year period in life table (period_lt)=== | |||
sequence(Start_year,Start_year+Followup_time+99,5) | |||
===Age of child (age_child)=== | |||
sequence(0,4,1) | |||
===Si_pi function (si_pi)=== | |||
'''Parameters:''' (data, kerroin;karkea,tarkka:indextype;indtieto) | |||
'''Description''' | |||
*Data = data to be divided into more detailed parts | |||
*Kerroin = relative weight inside a cluster | |||
*Karkea = index for the clustered data | |||
*Tarkka = index for the detailed data | |||
*Indtieto = Data about which detailed item belongs to which cluster | |||
'''Analytica code:''' | |||
var a:=sum((if indtieto=karkea then kerroin else 0), tarkka); | |||
a:= sum((if indtieto=karkea then a else 0), karkea); | |||
a:= kerroin/a; | |||
sum((if indtieto=karkea then data*a else 0), karkea) | |||
Revision as of 11:58, 8 July 2013
Life table calculations
Input data
Population structure in the beginning of the assessment follow-up period (pop_data)
| Obs | Age | Result | Kuvaus |
|---|---|---|---|
| 1 | 0 | 56683 | |
| 2 | 1 | 56683 | |
| 3 | 2 | 56683 | |
| 4 | 3 | 5668 | |
| 5 | 4 | 56683 | |
| 6 | 5 | 60615 | |
| 7 | 6 | 60615 | |
| 8 | 7 | 60615 | |
| 9 | 8 | 60615 | |
| 10 | 9 | 60615 | |
| 11 | 10 | 66167 | |
| 12 | 11 | 66167 | |
| 13 | 12 | 66167 | |
| 14 | 13 | 6616 | |
| 15 | 14 | 66167 | |
| 16 | 15 | 63786 | |
| 17 | 16 | 63786 | |
| 18 | 17 | 63786 | |
| 19 | 18 | 63786 | |
| 20 | 19 | 63786 | |
| 21 | 20 | 66423 | |
| 22 | 21 | 66423 | |
| 23 | 22 | 66423 | |
| 24 | 23 | 66424 | |
| 25 | 24 | 66423 | |
| 26 | 25 | 65882 | |
| 27 | 26 | 65882 | |
| 28 | 27 | 65882 | |
| 29 | 28 | 65882 | |
| 30 | 29 | 65882 | |
| 31 | 30 | 61495 | |
| 32 | 31 | 61495 | |
| 33 | 32 | 61495 | |
| 34 | 33 | 61495 | |
| 35 | 34 | 61495 | |
| 36 | 35 | 72474 | |
| 37 | 36 | 72474 | |
| 38 | 37 | 72474 | |
| 39 | 38 | 72474 | |
| 40 | 39 | 72474 | |
| 41 | 40 | 75917 | |
| 42 | 41 | 75917 | |
| 43 | 42 | 75917 | |
| 44 | 43 | 75917 | |
| 45 | 44 | 75917 | |
| 46 | 45 | 76977 | |
| 47 | 46 | 76977 | |
| 48 | 47 | 76977 | |
| 49 | 48 | 76977 | |
| 50 | 49 | 76977 | |
| 51 | 50 | 80206 | |
| 52 | 51 | 80206 | |
| 53 | 52 | 80206 | |
| 54 | 53 | 80206 | |
| 55 | 54 | 80206 | |
| 56 | 55 | 80291 | |
| 57 | 56 | 80291 | |
| 58 | 57 | 80291 | |
| 59 | 58 | 80291 | |
| 60 | 59 | 80291 | |
| 61 | 60 | 54300 | |
| 62 | 61 | 54300 | |
| 63 | 62 | 54300 | |
| 64 | 63 | 54300 | |
| 65 | 64 | 54300 | |
| 66 | 65 | 48077 | |
| 67 | 66 | 48077 | |
| 68 | 67 | 48077 | |
| 69 | 68 | 48077 | |
| 70 | 69 | 48077 | |
| 71 | 70 | 41475 | |
| 72 | 71 | 41475 | |
| 73 | 72 | 41475 | |
| 74 | 73 | 41475 | |
| 75 | 74 | 41475 | |
| 76 | 75 | 34987 | |
| 77 | 76 | 34987 | |
| 78 | 77 | 34987 | |
| 79 | 78 | 34987 | |
| 80 | 79 | 34987 | |
| 81 | 80 | 23300 | |
| 82 | 81 | 23300 | |
| 83 | 82 | 23300 | |
| 84 | 83 | 23300 | |
| 85 | 84 | 23300 | |
| 86 | 85 | 11292 | |
| 87 | 86 | 11292 | |
| 88 | 87 | 11292 | |
| 89 | 88 | 11292 | |
| 90 | 89 | 11292 | |
| 91 | 90 | 4394 | |
| 92 | 91 | 4394 | |
| 93 | 92 | 4394 | |
| 94 | 93 | 4394 | |
| 95 | 94 | 4394 | |
| 96 | 95 | 886 | |
| 97 | 96 | 886 | |
| 98 | 97 | 886 | |
| 99 | 98 | 886 | |
| 100 | 99 | 886 |
Annual birth rate (birth_rate)
| Obs | Follow-up period | Result | Kuvaus |
|---|---|---|---|
| 1 | 2010 | 57000 | |
| 2 | 2011 | 57000 | |
| 3 | 2012 | 57000 | |
| 4 | 2013 | 57000 | |
| 5 | 2014 | 57000 | |
| 6 | 2015 | 57000 | |
| 7 | 2016 | 57000 | |
| 8 | 2017 | 57000 | |
| 9 | 2018 | 57000 | |
| 10 | 2019 | 57000 | |
| 11 | 2020 | 57000 | |
| 12 | 2021 | 57000 | |
| 13 | 2022 | 57000 | |
| 14 | 2023 | 57000 | |
| 15 | 2024 | 57000 | |
| 16 | 2025 | 57000 | |
| 17 | 2026 | 57000 | |
| 18 | 2027 | 57000 | |
| 19 | 2028 | 57000 | |
| 20 | 2029 | 57000 |
Annual mortality rate (mort_rate)
| Obs | Age | Result | Kuvaus |
|---|---|---|---|
| 1 | 0 | 49.8 | |
| 2 | 1 | 49.8 | |
| 3 | 2 | 49.8 | |
| 4 | 3 | 49.8 | |
| 5 | 4 | 49.8 | |
| 6 | 5 | 10.2 | |
| 7 | 6 | 10.2 | |
| 8 | 7 | 10.2 | |
| 9 | 8 | 10.2 | |
| 10 | 9 | 10.2 | |
| 11 | 10 | 10.6 | |
| 12 | 11 | 10.6 | |
| 13 | 12 | 10.6 | |
| 14 | 13 | 10.6 | |
| 15 | 14 | 10.6 | |
| 16 | 15 | 30.6 | |
| 17 | 16 | 30.6 | |
| 18 | 17 | 30.6 | |
| 19 | 18 | 30.6 | |
| 20 | 19 | 30.6 | |
| 21 | 20 | 50 | |
| 22 | 21 | 50 | |
| 23 | 22 | 50 | |
| 24 | 23 | 50 | |
| 25 | 24 | 50 | |
| 26 | 25 | 47 | |
| 27 | 26 | 47 | |
| 28 | 27 | 47 | |
| 29 | 28 | 47 | |
| 30 | 29 | 47 | |
| 31 | 30 | 48.6 | |
| 32 | 31 | 48.6 | |
| 33 | 32 | 48.6 | |
| 34 | 33 | 48.6 | |
| 35 | 34 | 48.6 | |
| 36 | 35 | 99.4 | |
| 37 | 36 | 99.4 | |
| 38 | 37 | 99.4 | |
| 39 | 38 | 99.4 | |
| 40 | 39 | 99.4 | |
| 41 | 40 | 156.6 | |
| 42 | 41 | 156.6 | |
| 43 | 42 | 156.6 | |
| 44 | 43 | 156.6 | |
| 45 | 44 | 156.6 | |
| 46 | 45 | 247.6 | |
| 47 | 46 | 247.6 | |
| 48 | 47 | 247.6 | |
| 49 | 48 | 247.6 | |
| 50 | 49 | 247.6 | |
| 51 | 50 | 395.8 | |
| 52 | 51 | 395.8 | |
| 53 | 52 | 395.8 | |
| 54 | 53 | 395.8 | |
| 55 | 54 | 395.8 | |
| 56 | 55 | 555 | |
| 57 | 56 | 555 | |
| 58 | 57 | 555 | |
| 59 | 58 | 555 | |
| 60 | 59 | 555 | |
| 61 | 60 | 534 | |
| 62 | 61 | 534 | |
| 63 | 62 | 534 | |
| 64 | 63 | 534 | |
| 65 | 64 | 534 | |
| 66 | 65 | 702.4 | |
| 67 | 66 | 702.4 | |
| 68 | 67 | 702.4 | |
| 69 | 68 | 702.4 | |
| 70 | 69 | 702.4 | |
| 71 | 70 | 975 | |
| 72 | 71 | 975 | |
| 73 | 72 | 975 | |
| 74 | 73 | 975 | |
| 75 | 74 | 975 | |
| 76 | 75 | 1372.4 | |
| 77 | 76 | 1372.4 | |
| 78 | 77 | 1372.4 | |
| 79 | 78 | 1372.4 | |
| 80 | 79 | 1372.4 | |
| 81 | 80 | 1619.6 | |
| 82 | 81 | 1619.6 | |
| 83 | 82 | 1619.6 | |
| 84 | 83 | 1619.6 | |
| 85 | 84 | 1619.6 | |
| 86 | 85 | 1399.8 | |
| 87 | 86 | 1399.8 | |
| 88 | 87 | 1399.8 | |
| 89 | 88 | 1399.8 | |
| 90 | 89 | 1399.8 | |
| 91 | 90 | 934 | |
| 92 | 91 | 934 | |
| 93 | 92 | 934 | |
| 94 | 93 | 934 | |
| 95 | 94 | 934 | |
| 96 | 95 | 313 | |
| 97 | 96 | 313 | |
| 98 | 97 | 313 | |
| 99 | 98 | 313 | |
| 100 | 99 | 313 |
Mortality risk (mort_risk)
mort_rate / pop_data
Start year (start-year)
2010
Follow-up time in years (followup_time)
20
Analytica codes
Variables, which need to be translated into ovariables:
Population in time, child (pop_in_time_child)
var k: Birth_rate[Fu_year=Year_lt];
k:= if k = null then 0 else k;
var a:= if @Year_lt = 1 then Pop_data else (if @Age=1 then k else 0);
a:= a[Age=age_child];
var j:= Mort_risk[Age=age_child];
j:=j[Fu_period=Period_lt];
j:= Si_pi(j, 5, Period_lt, Year_lt, Year_help)*5;
j:= if j = null then j[Period_lt=max(Fu_period)] else j;
j:= if j < 0 then 0 else j;
j:= if j > 1 then 1 else j;
j:= 1-j;
var x:= 1;
while x<= min([size(age_child),size(Year_lt)]) do (
var b:= a*j; b:= b[@age_child=@age_child-1, @Year_lt=@Year_lt-1];
a:= if b=null then a else b;
x:= x+1);
sum(if Year_lt = period_vs_year then a else 0,Year_lt)
Population in time, beginning of time step (pop_in_time_beg)
var a:= sum(if floor(Age/5)+1 = @Age_cat then Pop_data else 0 , Age);
a:= if @Age_cat=1 then sum(Pop_in_time_child, Age_child) else (if @period_lt = 1 then a else 0);
var j:= Mort_risk;
j:=j[Fu_period=Period_lt];
j:= if j = null then j[Period_lt=max(Fu_period)] else j;
j:= if j < 0 then 0 else j;
j:= if j > 1 then 1 else j;
j:= 1-j;
j:= sum(if floor(Age/5)+1 = @Age_cat then j else 0 , Age)/5;
var m:=j[@Age_cat=@Age_cat+1];
m:= if m=null then 0 else m;
var n:=((j^5)+(j^4*m)+(j^3*m^2)+(j^2*m^3)+(j*m^4))/5;
var x:= 1;
while x<= min([size(Age_cat),size(Period_lt)]) do ( var b:= a*n;
b:= b[@Age_cat=@Age_cat-1, @Period_lt=@Period_lt-1];
a:= if b=null then a else b;
x:= x+1);
a
Indices and function used in the code above:
Follow-up year (fu_year)
sequence(Start_year,Start_year+(Followup_time-1),1)
Year in life table (year_lt)
sequence(Start_year,Start_year+Followup_time+99,1)
Follow-up period in 5-year time steps (fu_period)
sequence(Start_year,Start_year+(Followup_time-1),5)
5-year period in life table (period_lt)
sequence(Start_year,Start_year+Followup_time+99,5)
Age of child (age_child)
sequence(0,4,1)
Si_pi function (si_pi)
Parameters: (data, kerroin;karkea,tarkka:indextype;indtieto)
Description
- Data = data to be divided into more detailed parts
- Kerroin = relative weight inside a cluster
- Karkea = index for the clustered data
- Tarkka = index for the detailed data
- Indtieto = Data about which detailed item belongs to which cluster
Analytica code:
var a:=sum((if indtieto=karkea then kerroin else 0), tarkka);
a:= sum((if indtieto=karkea then a else 0), karkea);
a:= kerroin/a;
sum((if indtieto=karkea then data*a else 0), karkea)