Difference between revisions of "List of open tasks"

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[[op_fi:Avoimia tehtäviä]]
 
[[Category:Opasnet]]
 
[[Category:Opasnet]]
 
{{task|moderator=Jouni}}
 
{{task|moderator=Jouni}}
'''List of open tasks''' is a decentralised way of collecting useful information to [[Opasnet]] and improving the formatting or quality of the existing content. Anyone can contribute to Opasnet for free (see [[Main Page#How can you participate?]]). But there are some pieces of information and some tasks that are especially important for the [[THL]] maintenance team of [[Opasnet]]. Therefore, [[THL]] (National Institute for Health and Welfare, located in Finland) is willing to pay for those people who do the tasks listed on this page. Anyone can read the task list, search for the information, organise it into a proper format and upload it to the website.  
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'''List of open tasks''' is a decentralised way of collecting useful information to [[Opasnet]] and improving the formatting or quality of the existing content. Anyone can contribute to Opasnet for free (see [[Main Page#How can you participate?]]). But there are some pieces of information and some tasks that are especially important for the maintenance team of [[Opasnet]]. Therefore, the team is willing to pay for those people who do the tasks listed on this page. Anyone can read the task list, search for the information, organise it into a proper format and upload it to the website.  
  
==Scope==
+
==Question==
  
 
What is an efficient way to update [[Opasnet]] pages in such a way that
 
What is an efficient way to update [[Opasnet]] pages in such a way that
 
* the most important content gets high priority,
 
* the most important content gets high priority,
 
* the tasks are distributed outside the core Opasnet group if possible,
 
* the tasks are distributed outside the core Opasnet group if possible,
* the editors can get paid if they work on material that is of strategic interest to [[THL]],
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* the editors can get paid if they work on material that is of strategic interest to the Opasnet team,
 
* the quality of pages is kept high, and
 
* the quality of pages is kept high, and
 
* copyright rules of external material are not violated?
 
* copyright rules of external material are not violated?
  
==Definition==
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What tasks are there to improve the functionalities of Opasnet?
  
[[THL]] can organise this work and pay for the workers. The only requirements for the payment are that 1) the person registers him/herself to [[Opasnet]] and the [[THL]] system for payments, 2) the task and the amount of compensation for the work is agreed beforehand with the contact person, 3) and the contact person controls that the agreed work has actually been done. [[THL]] will pay for the social security costs based on the Finnish law. The taxes must be paid by the worker, but THL may take care of the practicalities if a Finnish tax deduction card is given to THL. Workers not located in Finland should find out about possible tax treaties and rules themselves. Note that this work does NOT make the worker an employee of [[THL]], and in addition to the monetary compensation, other benefits are NOT offered (no days off, unemployment security or similar).
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==Answer==
  
The contact person is [[User:Jouni|Jouni Tuomisto]]. Note that different tasks may have different contact persons.
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:''Summer 2014 tasks [http://en.opasnet.org/en-opwiki/index.php?title=List_of_open_tasks&oldid=33245 archived].
  
===Practical guidance===
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=== ICT tasks===
 
 
Encyclopedia articles are similar to those in Wikipedia (these are freely usable as long as you have appropriate citations), in other words, general descriptions about a topic. In our case, we are allowed to dive deeper in details of environmental and health related issues than a typical Wikipedia article would go.
 
 
 
A reviewer will be nominated for each task. He will read through the pages when they are finished. Additionally, you may ask him or Jouni for help and further instructions as well.
 
 
 
Browse through the following pages:
 
* http://en.opasnet.org/w/Information_collection_tasks_for_Opasnet
 
* http://en.opasnet.org/w/Main_Page#How_can_you_participate.3F
 
* http://en.opasnet.org/w/Help:Editing
 
* http://en.opasnet.org/w/Moderator
 
 
 
Some hints:
 
* From My preferences -link (upper right hand corner of the page) http://en.opasnet.org/w/Special:Preferences you should disable rich text editor (found in 'Editing' section)
 
* It's wise to categorize pages to classes by typing <nowiki>[[Category:Kategorian nimi]]</nowiki>  to the beginning of a page
 
** There are already existing categories  http://en.opasnet.org/w/Category:Main_category and you can come up with more of them if needed
 
* All sources of information must be cited properly using the following tag <nowiki><ref></nowiki>. Please look for more instructions http://en.opasnet.org/w/Help:Editing#Simple_reference_list
 
* The work will be payed by hourly wages (9.09€/hour), so keep track on your hours by filling in the following form: http://en.opasnet.org/en-opwiki/images/e/e0/Hely_tuntityo_thl.pdf
 
* The work will be payed as 'palkkiolasku' with the following form: http://en.opasnet.org/en-opwiki/images/9/9e/Hely_palkkiolasku_thl.pdf
 
** Fill in for the orderer of the work:  Jouni Tuomisto / YMAL / YMTO. Henkilönumero (HOT) must be left open.
 
  
Feel free to be bold, explore and learn by trying. You can not cause any irreversible damage because fixing the pages afterwards is very simple.
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'''Tasks for 2018 (probably easy fixes but not done)
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* Allow user account creation in op_fi [https://www.mediawiki.org/wiki/Manual:Preventing_access#Restrict_account_creation] (now is false): $wgGroupPermissions ['*']['createaccount'] = true;
 +
* Change the contact user (now is Juha Villman): //$wgContactUser = 'Jouni';
 +
* Update the postmaster info. Now it is postmaster@pyrkilo.fi but it is unlikely to work.
 +
** Password emailing at account creation does not work. Is this due to the wrong sender address?
 +
* Section tag shows on a wikipage but it should be hidden. Also, <nowiki>{{#lst:}}</nowiki> tag does not work [https://www.mediawiki.org/wiki/Extension:Labeled_Section_Transclusion]. Is this because dpl is used instead? How to transclude text under a heading without using section tag? This should work (see [https://www.mediawiki.org/wiki/Extension:DynamicPageList_(third-party)]) but I am not sure which version we have.
  
=Result=
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'''Less urgent tasks
 +
* Function summary() does not work for ovariables. Why? Is it due to method mismatch for ovariables? [https://stat.ethz.ch/R-manual/R-devel/library/base/html/UseMethod.html]
 +
* T2b tag does not work properly in op_fi. It seems that it is unable to store checksum and therefore thinks that all tables need updating when a page is opened (however, this happens only if the table has actually been changed since the 2017 major update).
 +
* LaTeX does not render properly. What is the problem? See [https://www.mediawiki.org/wiki/Manual:Troubleshooting_math_display_errors] and [https://www.mediawiki.org/wiki/Extension:Math]
 +
* Build a continuous work process with the following functionalities:
 +
** code is on git and pushed to a) Gitbucket and b) Github with a single click. [https://terho.thl.fi/wiki01/x/BzBDCQ Package workflow from Gitbucket]
 +
** Impact assessment modules have their own R package that can be downloaded from Github.
 +
** The newest version of OpasnetUtils is found in Github.
 +
**
 +
* There is an insight network functionality in Shiny where you can remove one or more of the used relations or nodes from the existing graph. However, the list offered includes all relations or nodes rather than only those that are in use. How to build such dynamics into the system. I know it is possible because I was able to render the data needed to the graph, but I could not find out how that data is fed into a selection field. [https://shiny.rstudio.com/articles/dynamic-ui.html] [https://stackoverflow.com/questions/17002160/shiny-tutorial-error-in-r] [http://shiny.rstudio.com/tutorial/written-tutorial/lesson4/]
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* Implement the https protocol in Opasnet: [https://www.keycdn.com/blog/http-to-https/] [https://certbot.eff.org/#centosrhel7-apache]
 +
* Implement JAGS and rjags in Opasnet: [https://www.r-bloggers.com/getting-started-with-jags-rjags-and-bayesian-modelling/] [https://sourceforge.net/projects/mcmc-jags/] [https://www.ncrn.cornell.edu/software/jags-for-rhel-centos-opensuse/] [http://download.opensuse.org/repositories/home:/cornell_vrdc/CentOS_7/x86_64/jags4-4.1.0-65.3.x86_64.rpm.mirrorlist]
 +
* Implement Wikibase [https://github.com/wmde/wikibase-docker/blob/master/README-compose.md]
 +
* Check what CSC has to offer [https://www.youtube.com/watch?v=uoDZ5CY2ln0&feature=youtu.be]
  
==Hyöty-riskiarviointi ydinvoimasta Suomessa==
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'''Older tasks
 +
* Koodi joka automaattisesti poistaa yli viikon vanhat R-ajot, joissa ei ole store=1.
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* Template http://fi.opasnet.org/fi/Malline:Piilota_sivupalkki causes trouble after wiki update and it should be corrected.
 +
* Luodaan css-muotoilu, jossa ei näy työkalupalkki eikä Opasnetin logo. Tätä käytetään Opasnetissä olevissa projektisivuissa kuten [[Goherr]].
 +
* Hankkiudutaan [http://www.openzim.org/wiki/OpenZIM OpenZIMin] asiakkaiksi niin, että he tekisivät ZIM-tiedostot Opasneteistä säännöllisesti.
 +
* Törmäsin googlessa tämmöiseen linkkiin: http://opasnet.fi/fi/Metallimalmikaivostoiminnan_tarkkailu_ja_raportointi Se löytää sivun, mutta se ei tunnista minua op_fi:n käyttäjäksi. Tämmöiset virheelliset muotoilut pitäisi automaattisesti uudelleenohjata, esim. opasnet.fi -> fi.opasnet.org. Käytössä on myös tämmöinen: http://vesiopas.fi/fi/Vesiopas. En ymmärrä näiden eri domainien logiikaa. Pitäisikö tätä hyödyntää niin, että esim. dss-muotoilut olisivat erilaiset, jos sivulle tulee fi.opasnet.org:n kautta kuin vesiopas.fi:n kautta?
 +
* Heandessa toiseen wikiin viittaavat linkit tyyppiä <nowiki>[[op_en:Main Page]]</nowiki> eivät toimi.
  
* [[:op_fi:Hyöty-riskiarviointi ydinvoimasta Suomessa|Hyöty-riskiarviointi ydinvoimasta Suomessa]]
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=== Wiki tasks ===
* [[:op_fi:Keskustelu:Hyöty-riskiarviointi ydinvoimasta Suomessa|Keskustelu:Hyöty-riskiarviointi ydinvoimasta Suomessa]]
 
  
==Plantlibra deliverables and tasks==
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* Blogin lopullinen teksti [https://blogi.thl.fi/blogi/-/blogs/vaikeat-energiapaatokset-on-hyva-tehda-laajana-yhteistyona] pitäisi kopioida kirjoitussivulle, muistaakseni [[:op_fi:Keskustelu:Helsingin energiapäätös 2015]].
 +
* Olennaiset kuvat pitäisi noukkia malliajosta eli ladata Opasnettiin ja linkata arvioinnin pääsivulle.
 +
** Building stock in Helsinki by Heating
 +
** Building stock in Helsinki by Renovation and EnergySavingPolicy
 +
** Energy used in heating in Helsinki by EnergySavingPolicy
 +
** Energy balance in Helsinki by Plant
 +
* Pitäisi tarkistaa malliajon tulokset ja lähtötiedot ja miettiä käyvätkö ne järkeen. Pitää myös verrata aiempaan, yksinkertaisempaan malliversioon [http://en.opasnet.org/en-opwiki/index.php?title=Special:RTools&id=iOrQttDzoCgmuKw2]
 +
* Pitäisi rakentaa suomennusfunktio kuten arvioinnissa [[:op_fi:Silakan hyöty-riskiarvionti]]
 +
* Tarkistetaan, että kaikissa lähtötiedoissa on vuosina 1985, 1995, ...2065.
 +
* Tarkistetaan todelliset käyttövuodet eri voimaloille.
 +
* [[Climate change policies in Helsinki]] siivoa ja arkistoi opiskelijaohjeet. Kirjoita puuttuvat asiat scopeen ja muualle.
 +
* Mietitään markkinointi kuntoon ja aletaan puhua tuloksista.
 +
** Tee yksi esimerkkitaulu dependencieseistä: muuttuja lähde kuvaus
 +
** Sivun lopussa on lista sivuista jotka oitäisi yhdistää jonnekin. Yhdistetään. 
 +
* Perusta otakantaa.fi sivuille hanke jossa tämän asian keskustelut käydään. Lisäksi perusta google docs jossa muokataan keskeisiä tekstejä. Mitä ne ovat?
 +
* [[:heande:Urban building policies, climate, and health]] sivun alussa olevat reviewer-lausunnot pitäisi käydä läpi ja korjata tuota sivua ehdotusten mukaisesti. Keskustelusivulle pistetään kopiot kaikista lausunnoista ja sinne kommentoidaan mitä on tehty.
 +
* [[Energy balance in Helsinki]] -sivulle pitäisi kuvata kaikki energiantuotannon yksikköprosessit.
 +
* Broken redirects: on tehty uudelleenohjaus sivulle, jota ei ole olemassa. Pitäisi keksiä, minne uudelleenohjaus oli tarkoitus ohjata ja laittaa se ohjaamaan sinne. Saattaa vaatia taustatietoa sivun tarkoituksesta.
 +
* Vasta sitten kun on ostettu lisää levytilaa: M-files-tiedostojen uploadaus Heandeen hakemistosta N:\YMAL\Projects\Opasnet\heande
  
Take the [http://heande.opasnet.org/heande/extensions/mfiles/mf_getfile.php?anon=true&docid=633&docver=1&fileid=633&filever=1&filename=PlantLIBRA2Annex.pdf Plantlibra description of work] and put all deliverables as pages to [[Heande]]. Note! Some delivarbles already exist in [[Opasnet]]. Check the [[:Category:Plantlibra]].
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===Tasks about R===
[http://ytoswww.ktl.fi/Mediaviki/index.php?title=Main_Page]
 
  
==Expoplatform==
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# Kehitetään interpret-funktiota siten, että se voi syödä useimpia tyypillisiä jakaumia.
 +
# OpasnetUtils-paketin päivitys Craniin loppukesästä 2015.
  
Copy-paste the text from [http://www.ktl.fi/expoplatform/home_ui/index.php Expoplatform] to [[Opasnet]]. Make plans how to do this seamlessly with Intarese toolbox.
+
==Rationale==
  
Responsible person: [[User:Arja|Arja]]
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'''These tasks are being considered in the tasks list but are not prioritised high enough.
  
{{todo|The summer workers are here. We should make a plan on Monday about how to format Expoplatform data in Opasnet. I'll put them to work on Plantlibra and Arsenic until we have sorted this out.|Einari Happonen, Arja Asikainen, Jouni Tuomisto}}
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* ICT-mallin life table -laskenta. Analytica-mallin laskentasolmut "Population in time, child" sekä "Population in time, beginning of time step" pitäisi koodata ovariableiksi. Tarvittavat lähtötiedot ja analytica-mallin koodit on kuvattu tänne: [[Impact Calculation Tool for R]].
 +
These are ideas of tasks but they are not in the task list yet.
 +
*Pitäisi rakentaa funktioita, joiden avulla päästään kiinni
 +
** [[rating bar]]in tuloksiin,
 +
** sivujen lataustilastoihin,
 +
** sivu- ja käyttäjäkohtaisiin muokkauspisteisiin. Juha V tietää tekniikasta. Tarkoituksena on kehittää pisteytyssysteemi sivuille, jotta lukijalle voidaan antaa lisätietoa sivun sisällön uskottavuudesta.
 +
* Hallitusohjelman budjettipelin laatiminen
  
==Heimtsa incidence database==
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===Checking of the rcode performance===
  
* Make an [[Opasnet]] page for each endpoint in Hilary's document.
+
The Opasnet Base has been updated, and some new functionalities are now available. As a side effect, many old Rcodes have stopped working. You should go through pages that have rcode (search eg. for "</rcode>"), test codes that you find, and report about them to this list.
* Upload data from Hilary to the [[Opasnet Base]].  
 
* N:\YMAL\Projects\Kantaan\European Morbidity
 
* [[Morbidity data for Europe]]
 
  
Responsible person: [[User:Jouni|Jouni]]
+
If a code works (i.e. it does not produce an error report but runs all the way to the last line of code (if you don't know how to check it, ask for help)), simply categorise the page to [[:Category:Contains R code]]. If it does NOT work, try the following:
 +
* A common problem is that the package OpasnetBaseUtils is no longer available. Change "library(OpasnetBaseUtils)" to "library(OpasnetUtils)".
 +
* If that does not help, change it to "library(OldOpasnetBaseUtils"). If that fixes the problem, update and save the code but also add a category: [[:Category:OldOpasnetBaseUtils]]
 +
* If you know enough R, you can also try to adjust the code based on error messages.
 +
* However, if you are not able to locate and fix the problem, do not save changes to the code. Just list the code to the list of tested codes.
  
==Arsenic to zoonoses to Opasnet==
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'''NOTE!''' The priority is on pages that have been recently updated. Very old codes are less interesting.
  
Make one nugget page for each of the chapters in [[Arsenic to zoonoses]]. Develop a template for the chapters of the book.
+
'''NOTE2!''' You can change and test a code without saving changes permanently. Just use Show preview.
  
==Dioxin synopsis==
+
* Make a template that makes links to those documents: <nowiki>{{IRIS links|id|toxireview}}</nowiki> (produces links to Quickview, Summary, and Toxicological review but to toxicological review only if the parameter toxreview exists (most of them don't). Details: [[IRIS]] The template does not yet exist.
 +
* http://www.integrated-assessment.eu The website is copied to Opasnet and organised (ca. 430 pages)
  
* Categorise all synopsis pages to Dioxin synopsis.
+
===Data upload to [[Opasnet Base]]===
* Make the [[Dioxin synopsis]] page as a table of contents for the synopsis.
 
* Make the Finnish pages in the same way, using the translated text in [[Dioxin synopsis]].
 
* Link each page of English and Finnish synopsis with <nowiki>[[heande:] and [[op_en:]]</nowiki> links.
 
 
 
# [[Dioxin synopsis#Suomennos|Synopsis of dioxins and PCBs]] (Finnish version).
 
#* Material: Publications of the National Public Health Institute, 1999.
 
#* Task: Transform the material into encyclopedia articles, one page for each keyword, into the [[:op_fi:Etusivu|Finnish Opasnet]].
 
#* Copyright: Permission from the authors {{disclink|Copyright of the dioxin synopsis}} to release material to public domain.
 
 
 
Responsible person: [[User:Jouni|Jouni]].
 
 
 
==Writing of [[Intarese]] Toolbox pages (WP1.4)==
 
 
 
{{todo|Upload this data to the Intarese Toolbox. DL: Stuttgart workshop 18.6.2010|Jouni Tuomisto, Arja Asikainen|Project=Intarese 4.2}}
 
 
 
{| {{prettytable}}
 
! Specification of deliverables (according to deliverables list Feb 2010)
 
! Planned deadline  deliverable
 
! Delivered as general product (yes/ no/ partly)
 
! Location in toolbox<sup>2</sup>
 
! Delivered into the toolbox (yes/ no/ partly)
 
! Type of page<sup>1</sup>
 
! Person responsible for remaining tasks
 
! Comments
 
|----
 
| Indicator selection|| 54|| yes|| What indicators should be used.../ building good indicators|| no|| G|| PBL Eva||
 
|----
 
| Calculating DALYs and QALYs|| 54|| yes|| Execution/ impact analysis/ measures of impact || partly|| G|| RIVM Anne||
 
|----
 
| Calculating DALYs and QALYs|| 54|| no|| Execution/ impact analysis/ measures of impact || [http://www.integrated-assessment.eu/resource_centre/impact_calculation_tool partly]|| M|| RIVM Anne?||
 
|----
 
| [[DALY weights|Severity weights]]|| 54|| no|| Execution/ impact analysis/ measures of impact/Calculating DALYs and QALYs || || D|| RIVM Anne|| SAME AS D128. SOME MATERIAL from the link
 
|----
 
| Monetisation methods|| 54|| yes?|| Execution/ impact analysis/ measures of impact || partly?|| G + M + D|| Alistair Hunt (HEIMTSA) with help from Tifanny from RIVM||
 
|----
 
| Risk Perception|| 54|| yes?|| What indicators should be used... || no|| G + M?|| RIVM Ric?||
 
|----
 
| [[Open assessment]]|| 54|| ready|| Issue framing/ key points/ concept of IEHIA/ other assessment methodologies|| no|| G|| THL Jouni||
 
|----
 
| [[Collaborative workspace]] || -|| ready|| Execution/ Key considerations/ collaborating on an assessment || no|| D || THL Jouni||
 
|----
 
| [[Opasnet Base|Result database]]|| 54|| no|| Design/ feasibility testing/ information needs || no|| D|| THL Jouni||
 
|----
 
| Multiple bias [http://heande.opasnet.org/wiki/Combining_dioxin_epidemiology_and_toxicology]|| 54|| no|| Design/ feasibility testing/ information needs/ exposure-response functions || no|| G|| THL Marjo||
 
|----
 
| [[Value of information]]|| 54|| yes|| Execution/ uncertainty analysis|| [http://www.integrated-assessment.eu/node/221 yes]|| G|| THL Jouni||
 
|----
 
| [[:File:VOI_analysis.ANA|Value of information model]]|| 54|| yes|| Execution/ uncertainty analysis/ value of information|| no|| M|| THL Jouni||
 
|----
 
| Quality/Performance [http://heande.opasnet.org/wiki/Purpose_and_properties_of_good_assessments]|| 54|| yes|| Execution/ uncertainty analysis|| no|| G|| THL Mikko||
 
|----
 
| [[:heande:Protocol on stakeholder involvement|Protocol on stakeholder involvement]]. [http://heande.opasnet.org/wiki/Organizing_stakeholder_involvement]|| 50|| yes|| Issue framing/ Who are the stakeholders/ Engaging stakeholders/ methods for stakeholder engagement|| no|| G|| THL Mikko|| Part of D47 (detailed description). Delivered at mo 50.
 
|----
 
| [[Participating in assessments]] [http://heande.opasnet.org/wiki/HI:D47_Protocol_on_stakeholder_involvement] || 50|| yes|| Issue framing/ Who are the stakeholders/ Engaging stakeholders/ methods for stakeholder engagement|| no|| G|| THL Mikko|| Part of D47 (an overview).
 
|----
 
|}
 
 
 
<sup>1</sup> Types of toolbox pages: (Guidebook/ Resource - Model or tool/ Resource - Worked Example/ Resource - Data)<br>
 
<sup>2</sup> Based on the toolbox structure on 6 May 2010 [http://N:\YMTO\PROJECTS\INTARESE\WP4_2\Toolbox_structure_v4.ppt]
 
 
 
==Uploading articles to Heande==
 
 
 
There are a lot of articles that should be uploaded to M-files in Heande. These are currently located in P:\huippuyksikko\kirjallisuus.
 
* The names of the files should be changed to the standard format: Lastnameoffirstauthor_Year_Journal_Description.pdf
 
*: {{attack|1 |There are 2800 files. This is not time efficient to do.|--[[User:Jouni|Jouni]] 12:00, 28 May 2010 (UTC)}}
 
* New pages should be created in Heande according to the topics of the articles.
 
** The default names for the pages are the folder names on P drive.
 
** All pages should contain the <nowiki>{{mfiles}} template.</nowiki>
 
* In addition, if there are similar pages in [[Opasnet]], links to the new Heande pages should be added both in the ''See also'' section and also using <nowiki>[[heande:Page name|]]</nowiki> link (which creates a link to Heande to the sidebar on left.
 
 
 
==Data upload to [[Opasnet Base]]==
 
  
 
* [[:File:IIASA World Population Program.ANA|IIASA World Population Program.ANA]]
 
* [[:File:IIASA World Population Program.ANA|IIASA World Population Program.ANA]]
Line 154: Line 114:
 
* [[:Image:WHO mortality data.ANA]]
 
* [[:Image:WHO mortality data.ANA]]
 
* [[:Image:WHO morbidity data.ANA]]
 
* [[:Image:WHO morbidity data.ANA]]
 +
* Upload relevant Beneris data to [[Opasnet Base]]. Responsible person: [[User:Olli|Olli]]
  
==Beneris data==
+
===Templates of page types===
 
 
Upload relevant Beneris data to [[Opasnet Base]].
 
 
 
Responsible person: [[User:Olli|Olli]]
 
 
 
==General cleaning of pages==
 
 
 
Clean up pages in [[Opasnet]].
 
 
 
Responsible person: [[:User:Mikko Pohjola|Mikko Pohjola]]
 
 
 
==Miscellaneous==
 
 
 
Go though Reetta's edits and add the WHO vocabulary link where relevant. (See below)
 
 
 
# Add the terminology list of a [http://www.who.int/ipcs/methods/harmonization/draft_document_for_comment.pdf WHO report] to the [[Glossary]].
 
#* Moderator: Reetta Tiihonen
 
#* Copyright: Only short pieces of text will be quoted; attribution is given to the original source.
 
 
 
==Templates of page types==
 
  
 
The following template pages should be updated based on the following object structure descriptions. The [[Template:Assessment structure]] has been done as example.
 
The following template pages should be updated based on the following object structure descriptions. The [[Template:Assessment structure]] has been done as example.
Line 181: Line 122:
 
* [[Template:Assessment structure]] based on [[Assessment structure]] DONE
 
* [[Template:Assessment structure]] based on [[Assessment structure]] DONE
 
* [[Template:Method structure]] based on [[Method]]
 
* [[Template:Method structure]] based on [[Method]]
* [[Template:Tool structure]] based on [[Tool]]
 
 
* [[Template:Study structure]] based on [[Study]]
 
* [[Template:Study structure]] based on [[Study]]
 
* [[Template:Lecture structure]] based on [[Lecture]]
 
* [[Template:Lecture structure]] based on [[Lecture]]
 
* [[Template:Encyclopedia structure]] based on [[Encyclopedia article]]
 
* [[Template:Encyclopedia structure]] based on [[Encyclopedia article]]
* [[Template:Task structure]] based on [[Task]]
 
* [[Template:Nugget structure]] based on [[Nugget]]
 
* [[Template:Class structure]] based on [[Class]]
 
  
==Rewriting existing topics in [[Opasnet]]==
+
===Page type update===
 
 
Some pages are outdated or overlapping with other pages. Therefore, there are needs to restructure and rewrite existing pages.
 
* Merge overlapping text in [[Opasnet]] and [[Welcome to Opasnet]].
 
 
 
==Page type update==
 
  
 
All pages should have a page type. Also, some pages have been classified into a poor page type, because the practices have changed over time. Also the structure should be improved towards Scope, Definition, Result if applicable. Therefore, there are tasks to:
 
All pages should have a page type. Also, some pages have been classified into a poor page type, because the practices have changed over time. Also the structure should be improved towards Scope, Definition, Result if applicable. Therefore, there are tasks to:
Line 203: Line 135:
 
* The Variable namespace should be checked, as a lot of it seems to have moved to the Main namespace.
 
* The Variable namespace should be checked, as a lot of it seems to have moved to the Main namespace.
  
==Improving categorisation==
+
===Practical guidance===
  
The existing categories are not well developed and systematic. Therefore, there are tasks to:
+
Browse through the following pages:
* improve the categorisation system, preferably based on some existing classification,
+
* http://en.opasnet.org/w/Information_collection_tasks_for_Opasnet
* go through the pages and update categories.
+
* http://en.opasnet.org/w/Main_Page#How_can_you_participate.3F
* Category:Assessment method articles categorized to Category:Method instead.
+
* http://en.opasnet.org/w/Help:Editing
 +
* http://en.opasnet.org/w/Moderator
 +
* http://en.opasnet.org/w/Help:Editing#Linking '''UPDATED INSTRUCTIONS!'''
  
==Writing about important topics==
+
* The work will be payed as 'palkkiolasku' with the following form [[media:Hely_palkkiolasku_thl.pdf|Hely_palkkiolasku]].
  
There are several important topics that should be covered in [[Opasnet]]. However, these are not simple copy-paste work and they require that someone gets acquainted with the topics and summarises them. Such topics are listed here:
+
Feel free to be bold, explore and learn by trying. You can not cause any irreversible damage because fixing the pages afterwards is very simple.
* Artikkeli bisneksestä, jossa valtio maksaa siitä, että joku auttaa toista säästämään energiaa. Ennen säästötoimia kirjataan energiankulutus, ja säästöä seurataan. Konsultti saa palkkionsa toteutuneen säästön mukaan. Jos tulee lisäkulua, konsultti joutuu maksumieheksi. Onko tästä jo artikkeli jossain? Tyjakissa?
 
 
 
 
 
==Checking potentially important web links==
 
 
 
Ohje tämmöisiin tilanteisiin: Kirjoitetaan Opasnetiin (tässä tapauksessa suomenkieliselle sivulle Kuntapeli) aiheen kuvaus lyhyesti vaikka vain kopioimalla suoraan spostista. Yksityiskohtaisemmat jutustelut voi kopioida keskustelusivulle. Aiheeseen liittyvät tiedostot ladataan Heandeen (tai jos käytettävissä on M-files, mieluummin sen Opasnet public-osioon siten, että tiedostot näkyvät Heandessa). Tämä tiedostojen omituinen sijoittelu johtuu tekijänoikeuksista. Heandeen luodaan myös sivu Kuntapeli, joka sisältää ainoastaan linkit kyseisiin tiedostoihin ja varsinaiselle sivulle (suomenkieliseen) Opasnetiin.
 
 
 
Varsinaiselle sivulle laitetaan linkki vastaavasti Heanden sivulle. Tavanomaisten linkkien [[:heande:Kuntapeli|Kuntapeli]]  lisäksi laitetaan linkki muotoa [[heande:Kuntapeli|Kuntapeli]] eli ilman kaksoispistettä. Tämän jälkimmäisen hienous on siinä että se tekee linkin sivupalkkiin otsikolla "Heande" samaan tapaan kuin Wikipediat linkkaavat erikielisten Wikipedioitten sivuja toisiinsa.
 
 
 
 
 
Some web links seem interesting and important for [[Opasnet]], but more time is needed to look at those. Only then it is possible to decide, whether the information should be linked to from some [[Opasnet]] pages, or whether the information deserves a page of its own. These web links include:
 
* [http://eurpub.oxfordjournals.org/cgi/content/extract/ckn019 A network strategy to advance public health in Europe by Jan C. Semenza]
 
* http://www.lvm.fi/web/fi/tiedote/view/842376 Liikenneministeriön ilmatopoliittinen suunnitelma
 
* http://pehmo.hut.fi/turku/htdocs/flash/ PehmoGIS paikkatietoliittymä
 
* [http://www.envie-iaq.eu/documents/finalreports/Final%20Reports%20Publishable/Publishable%20final%20activity%20report.pdf Envie project report and conclusions] http://www.envie-iaq.eu/finalreports.html
 
* Stern report
 
** http://www.hm-treasury.gov.uk/d/PART_VI_Introduction_group.pdf
 
** http://www.hm-treasury.gov.uk/stern_review_report.htm
 
** http://en.wikipedia.org/wiki/Stern_Review
 
* [http://akseli.tekes.fi/opencms/opencms/OhjelmaPortaali/ohjelmat/Yhdyskunta/fi/etusivu.html Tekes seminaari]
 
* [http://sustainabilitysummit.mit.edu/agenda MIT sustainability summit]
 
* [http://akseli.tekes.fi/opencms/opencms/OhjelmaPortaali/ohjelmat/Yhdyskunta/fi/system/tapahtuma.html?id=2224&nav=Tapahtuma Tekes energiatehokkuusseminaari]
 
* [http://akseli.tekes.fi/opencms/opencms/OhjelmaPortaali/ohjelmat/Yhdyskunta/fi/system/tapahtuma.html?id=2232&nav=Tapahtuma Tekes elinkaarimalli]
 
* [http://akseli.tekes.fi/opencms/opencms/OhjelmaPortaali/ohjelmat/Yhdyskunta/fi/system/tapahtuma.html?id=2199&nav=Tapahtuma Tekes intelligent energy management]
 
* [[:fi:David Bohm]] [[:en:David Bohm]]
 
* [http://www.david-bohm.net/ Homepage of David Bohm]
 
* [[:en:Bohm Dialogue]]
 
* [http://nuortenhelsinki.foorumit.fi/index.php Nuorten Helsinki: nuorisovaltuusto Helsinkiin!]
 
* [http://nuorisovaltuusto-hel.blogspot.com/ Nuorten Helsinki: toimintasuunnitelma 2009-2010]
 
 
 
==Copying dissertation theses of THL/YMTO to [[Opasnet]]==
 
  
* All theses produced in THL/YMTO should be chopped into pieces and encyclopedia articles should be made out of them in Opasnet.
+
==See also==
  
 +
* [http://en.opasnet.org/en-opwiki/index.php?title=List_of_open_tasks&oldid=26438 Many old tasks from 2012 were archived]
  
===Tasks to be done===
+
==References==
  
# Take the EFSA data ([http://www.efsa.europa.eu/EFSA/General/DATEX_ConciseDB_All_subjects,3.xls?ssbinary=true total population], [http://www.efsa.europa.eu/EFSA/General/DATEX_ConciseDB_Consumers_only,3.xls?ssbinary=true Consumers only]) and upload it to the [[Opasnet Base]]. Make a [[variable]] based on the data.
+
<references/>
# Write an [[encyclopedia article]] about the [http://www.who.int/ipcs/methods/harmonization/draft_document_for_comment.pdf Proast software] for dose-response modelling (developed by Wout Slob in [[RIVM]]). A [http://toxsci.oxfordjournals.org/cgi/reprint/66/2/298 related article].
 
# Create a [[method]] about the Proast software (there is an R code for the software).
 
# Find the newest [[WHO]] guidance for dose-response modelling and make methods out of that. A [http://www.who.int/ipcs/methods/harmonization/draft_document_for_comment.pdf draft guidance] is known to us, but there may be newer material.
 
# Make a full page of [[:op_fi:IVA|human impact assessment]] based on the links on the page. This is in Finnish. Make each ideakortti into a method.
 
# Dissertation about dioxins
 
#* Material: Tuomisto, JT: TCDD: A challenge to mechanistic toxicology. Publications of the National Public Health Institute, 1999.
 
#* Task A: Suggest a list of [[variable]]s, [[study|studies]], and [[encyclopedia article]]s that would cover the material.
 
#* Task B: Transform the material into these pages in the correct format (see [[universal object]]).
 
#* Copyright: Permission from the [[User:Jouni|author]] to release material with [[GFDL]].
 
# Get the dioxin concentration data that has been provided and collected based on the dioxin directive. The data is in the European Commission.
 
# Upload the data from Task 4 into [[Opasnet Base]].
 
# Put [http://www.ymparisto.fi/default.asp?contentid=324992&lan=FI OECD Environmental report] about Finland to the [[:op_fi:Etusivu|Finnish Opasnet]].
 
#* Material: [http://www.ymparisto.fi/download.asp?contentid=104114&lan=fi] (should be chopped into relevant pieces first)
 
# Put the respective English text to English Opasnet.
 
# Make an [[encyclopedia article]] about the mid-term report of the [http://www.hs.fi/arkisto/haku?pageNumber=1&order=FIFO&advancedSearch=1&free=energia&date=20080721&depa=Kaupunki&fromDay=1&fromMonth=6&fromYear=2009&toDay=3&toMonth=6&toYear=2009 Helsinki energy plan]. So far, only news about the report have been found.
 
# Make an [[encyclopedia article]] about Kofi Annan's [http://www.ghf-geneva.org/OurWork/RaisingAwareness/HumanImpactReport/tabid/180/Default.aspx Human Impact Report]. Maybe some details can also be turned into [[variable]]s.
 
# Make an [[encyclopedia article]] about the Finnish energy strategy. [[:fi:Suomen hallituksen ilmasto- ja energiastrategia 2008|Suomen hallituksen ilmasto- ja energiastrategia 2008]] [http://www.energiastrategia.fi/energiastrategia/] [http://www.energia.fi/fi/ajankohtaista/et_toimii/kansallinen_energiapolitiikka/hallituksen%20ilmasto%20ja%20energiastrategia.html]  [http://www.sll.fi/tiedotus/lausunnot/liitto/2009/TuV-ilmasto-ja-energiastrategia-SLL.pdf].
 
#* Create also an [[assessment]] about the strategy, taking the targets as the [[scenario]] for the assessment. When the assessment develops into a full-blown [[BBN]], the strategy can be used to conditionalise the model to find optimal actions to reach the targets.
 
  
===Tasks under work or under review===
+
==Related files==
  
# Copying the material from the EU [http://iatools.jrc.ec.europa.eu/bin/view/IQTool/WebHome.html IA Tools]
+
{{mfiles}}
#* Moderator: [[User:Heta|Heta]]
 
#* Copyright: may be freely used if the source is properly cited.
 
# Make encyclopedia articles about these food topics:
 
#* Make an encyclopedia article about [[EFSA]].
 
#* Write an [[encyclopedia article]] about the Finnish food database [http://www.fineli.fi Fineli].
 
#* Write an [[encyclopedia article]] about the Dutch food database [http://www.rivm.nl/nevo_en/nevo/ Nevo].
 
#* Write an [[encyclopedia article]] about the [http://www.efsa.europa.eu/EFSA/ScientificPanels/DATEX/efsa_locale-1178620753812_ConciseEuropeanConsumptionDatabase.htm EFSA food database]
 
#* Moderator: [[User:LauraHuikko|LauraHuikko]]
 
#* Copyright: Text is not directly copy-pasted but synthesised; therefore, the author has the copyright and is allowed to submit the text to Opasnet.
 

Latest revision as of 18:10, 11 December 2019


List of open tasks is a decentralised way of collecting useful information to Opasnet and improving the formatting or quality of the existing content. Anyone can contribute to Opasnet for free (see Main Page#How can you participate?). But there are some pieces of information and some tasks that are especially important for the maintenance team of Opasnet. Therefore, the team is willing to pay for those people who do the tasks listed on this page. Anyone can read the task list, search for the information, organise it into a proper format and upload it to the website.

Question

What is an efficient way to update Opasnet pages in such a way that

  • the most important content gets high priority,
  • the tasks are distributed outside the core Opasnet group if possible,
  • the editors can get paid if they work on material that is of strategic interest to the Opasnet team,
  • the quality of pages is kept high, and
  • copyright rules of external material are not violated?

What tasks are there to improve the functionalities of Opasnet?

Answer

Summer 2014 tasks archived.

ICT tasks

Tasks for 2018 (probably easy fixes but not done)

  • Allow user account creation in op_fi [1] (now is false): $wgGroupPermissions ['*']['createaccount'] = true;
  • Change the contact user (now is Juha Villman): //$wgContactUser = 'Jouni';
  • Update the postmaster info. Now it is postmaster@pyrkilo.fi but it is unlikely to work.
    • Password emailing at account creation does not work. Is this due to the wrong sender address?
  • Section tag shows on a wikipage but it should be hidden. Also, {{#lst:}} tag does not work [2]. Is this because dpl is used instead? How to transclude text under a heading without using section tag? This should work (see [3]) but I am not sure which version we have.

Less urgent tasks

  • Function summary() does not work for ovariables. Why? Is it due to method mismatch for ovariables? [4]
  • T2b tag does not work properly in op_fi. It seems that it is unable to store checksum and therefore thinks that all tables need updating when a page is opened (however, this happens only if the table has actually been changed since the 2017 major update).
  • LaTeX does not render properly. What is the problem? See [5] and [6]
  • Build a continuous work process with the following functionalities:
    • code is on git and pushed to a) Gitbucket and b) Github with a single click. Package workflow from Gitbucket
    • Impact assessment modules have their own R package that can be downloaded from Github.
    • The newest version of OpasnetUtils is found in Github.
  • There is an insight network functionality in Shiny where you can remove one or more of the used relations or nodes from the existing graph. However, the list offered includes all relations or nodes rather than only those that are in use. How to build such dynamics into the system. I know it is possible because I was able to render the data needed to the graph, but I could not find out how that data is fed into a selection field. [7] [8] [9]
  • Implement the https protocol in Opasnet: [10] [11]
  • Implement JAGS and rjags in Opasnet: [12] [13] [14] [15]
  • Implement Wikibase [16]
  • Check what CSC has to offer [17]

Older tasks

  • Koodi joka automaattisesti poistaa yli viikon vanhat R-ajot, joissa ei ole store=1.
  • Template http://fi.opasnet.org/fi/Malline:Piilota_sivupalkki causes trouble after wiki update and it should be corrected.
  • Luodaan css-muotoilu, jossa ei näy työkalupalkki eikä Opasnetin logo. Tätä käytetään Opasnetissä olevissa projektisivuissa kuten Goherr.
  • Hankkiudutaan OpenZIMin asiakkaiksi niin, että he tekisivät ZIM-tiedostot Opasneteistä säännöllisesti.
  • Törmäsin googlessa tämmöiseen linkkiin: http://opasnet.fi/fi/Metallimalmikaivostoiminnan_tarkkailu_ja_raportointi Se löytää sivun, mutta se ei tunnista minua op_fi:n käyttäjäksi. Tämmöiset virheelliset muotoilut pitäisi automaattisesti uudelleenohjata, esim. opasnet.fi -> fi.opasnet.org. Käytössä on myös tämmöinen: http://vesiopas.fi/fi/Vesiopas. En ymmärrä näiden eri domainien logiikaa. Pitäisikö tätä hyödyntää niin, että esim. dss-muotoilut olisivat erilaiset, jos sivulle tulee fi.opasnet.org:n kautta kuin vesiopas.fi:n kautta?
  • Heandessa toiseen wikiin viittaavat linkit tyyppiä [[op_en:Main Page]] eivät toimi.

Wiki tasks

  • Blogin lopullinen teksti [18] pitäisi kopioida kirjoitussivulle, muistaakseni op_fi:Keskustelu:Helsingin energiapäätös 2015.
  • Olennaiset kuvat pitäisi noukkia malliajosta eli ladata Opasnettiin ja linkata arvioinnin pääsivulle.
    • Building stock in Helsinki by Heating
    • Building stock in Helsinki by Renovation and EnergySavingPolicy
    • Energy used in heating in Helsinki by EnergySavingPolicy
    • Energy balance in Helsinki by Plant
  • Pitäisi tarkistaa malliajon tulokset ja lähtötiedot ja miettiä käyvätkö ne järkeen. Pitää myös verrata aiempaan, yksinkertaisempaan malliversioon [19]
  • Pitäisi rakentaa suomennusfunktio kuten arvioinnissa op_fi:Silakan hyöty-riskiarvionti
  • Tarkistetaan, että kaikissa lähtötiedoissa on vuosina 1985, 1995, ...2065.
  • Tarkistetaan todelliset käyttövuodet eri voimaloille.
  • Climate change policies in Helsinki siivoa ja arkistoi opiskelijaohjeet. Kirjoita puuttuvat asiat scopeen ja muualle.
  • Mietitään markkinointi kuntoon ja aletaan puhua tuloksista.
    • Tee yksi esimerkkitaulu dependencieseistä: muuttuja lähde kuvaus
    • Sivun lopussa on lista sivuista jotka oitäisi yhdistää jonnekin. Yhdistetään.
  • Perusta otakantaa.fi sivuille hanke jossa tämän asian keskustelut käydään. Lisäksi perusta google docs jossa muokataan keskeisiä tekstejä. Mitä ne ovat?
  • heande:Urban building policies, climate, and health sivun alussa olevat reviewer-lausunnot pitäisi käydä läpi ja korjata tuota sivua ehdotusten mukaisesti. Keskustelusivulle pistetään kopiot kaikista lausunnoista ja sinne kommentoidaan mitä on tehty.
  • Energy balance in Helsinki -sivulle pitäisi kuvata kaikki energiantuotannon yksikköprosessit.
  • Broken redirects: on tehty uudelleenohjaus sivulle, jota ei ole olemassa. Pitäisi keksiä, minne uudelleenohjaus oli tarkoitus ohjata ja laittaa se ohjaamaan sinne. Saattaa vaatia taustatietoa sivun tarkoituksesta.
  • Vasta sitten kun on ostettu lisää levytilaa: M-files-tiedostojen uploadaus Heandeen hakemistosta N:\YMAL\Projects\Opasnet\heande

Tasks about R

  1. Kehitetään interpret-funktiota siten, että se voi syödä useimpia tyypillisiä jakaumia.
  2. OpasnetUtils-paketin päivitys Craniin loppukesästä 2015.

Rationale

These tasks are being considered in the tasks list but are not prioritised high enough.

  • ICT-mallin life table -laskenta. Analytica-mallin laskentasolmut "Population in time, child" sekä "Population in time, beginning of time step" pitäisi koodata ovariableiksi. Tarvittavat lähtötiedot ja analytica-mallin koodit on kuvattu tänne: Impact Calculation Tool for R.

These are ideas of tasks but they are not in the task list yet.

  • Pitäisi rakentaa funktioita, joiden avulla päästään kiinni
    • rating barin tuloksiin,
    • sivujen lataustilastoihin,
    • sivu- ja käyttäjäkohtaisiin muokkauspisteisiin. Juha V tietää tekniikasta. Tarkoituksena on kehittää pisteytyssysteemi sivuille, jotta lukijalle voidaan antaa lisätietoa sivun sisällön uskottavuudesta.
  • Hallitusohjelman budjettipelin laatiminen

Checking of the rcode performance

The Opasnet Base has been updated, and some new functionalities are now available. As a side effect, many old Rcodes have stopped working. You should go through pages that have rcode (search eg. for "</rcode>"), test codes that you find, and report about them to this list.

If a code works (i.e. it does not produce an error report but runs all the way to the last line of code (if you don't know how to check it, ask for help)), simply categorise the page to Category:Contains R code. If it does NOT work, try the following:

  • A common problem is that the package OpasnetBaseUtils is no longer available. Change "library(OpasnetBaseUtils)" to "library(OpasnetUtils)".
  • If that does not help, change it to "library(OldOpasnetBaseUtils"). If that fixes the problem, update and save the code but also add a category: Category:OldOpasnetBaseUtils
  • If you know enough R, you can also try to adjust the code based on error messages.
  • However, if you are not able to locate and fix the problem, do not save changes to the code. Just list the code to the list of tested codes.

NOTE! The priority is on pages that have been recently updated. Very old codes are less interesting.

NOTE2! You can change and test a code without saving changes permanently. Just use Show preview.

  • Make a template that makes links to those documents: {{IRIS links|id|toxireview}} (produces links to Quickview, Summary, and Toxicological review but to toxicological review only if the parameter toxreview exists (most of them don't). Details: IRIS The template does not yet exist.
  • http://www.integrated-assessment.eu The website is copied to Opasnet and organised (ca. 430 pages)

Data upload to Opasnet Base

Templates of page types

The following template pages should be updated based on the following object structure descriptions. The Template:Assessment structure has been done as example.

Page type update

All pages should have a page type. Also, some pages have been classified into a poor page type, because the practices have changed over time. Also the structure should be improved towards Scope, Definition, Result if applicable. Therefore, there are tasks to:

  • develop a page that lists all pages without a page type,
  • go through all pages without a page type and classify them,
  • reclassifying pages into better types when they are being edited for other reasons.
  • The current pages will be cleaned up. Two major things: check the page type (variable, assessment...), and add any relevant categories.
  • The Variable namespace should be checked, as a lot of it seems to have moved to the Main namespace.

Practical guidance

Browse through the following pages:

Feel free to be bold, explore and learn by trying. You can not cause any irreversible damage because fixing the pages afterwards is very simple.

See also

References


Related files

<mfanonymousfilelist></mfanonymousfilelist>